PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G246900.5
Common NameB456_010G246900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 99aa    MW: 10228.9 Da    PI: 9.3593
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G246900.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD149.28.6e-161034125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        Cg+Crt+L+YP+GApsV+Ca+C+ V
  Gorai.010G246900.5 10 CGHCRTTLMYPYGAPSVKCAVCQYV 34
                        ***********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-12737IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-141034IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MLHQISHITC GHCRTTLMYP YGAPSVKCAV CQYVTNVGMG NVRVPLPVNR PNGKAATGSM  60
ATPSASPSQT VVVENPMSVD ESGKLVSNVV VGITTGKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451569.11e-62PREDICTED: protein LSD1-like
RefseqXP_012451568.11e-62PREDICTED: protein LSD1-like
SwissprotP940771e-40LSD1_ARATH; Protein LSD1
TrEMBLA0A0D2VEX34e-66A0A0D2VEX3_G
STRINGBra020924.1-P7e-41(Brassica rapa)
STRINGBra013460.1-P2e-40(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.78e-42LSD family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]